說明
These data are the result from the final stage (Manaus, Brazil) of the XPRIZE Rainforest competition. During 24 hours data was captured (predominantly audio and eDNA) and it was analyzed during the 48 hours afterwards. The data contains the unique species that were detected at each location through both methods.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 347 筆紀錄。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
André M, Esterci Ramalho E, Marquès-Bonet T, Hidalgo Hidalgo S, Erbs F, Storer E, van der Schaar M, Gomes L, Correa Acosta R, Batista Vieira C, Meloni Nassar P, Lizano Gonzalez E, Juan D, Esteban Wenge L, Da Silva Mendoza I, Fernando Saraiva de Menezes J, Sanchez Marrero A, Molina Cruz P, Fugarolas Vilà M (2024). XPRIZE Rainforest Brazil (Manaus) Final. Version 1.0. Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC). Occurrence dataset. https://doi.org/10.15470/jjbagl
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC)。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 8e86cea4-2c9c-47b2-953c-ce8394cbba13。 Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC) 發佈此資源，並經由GBIF Spain同意向GBIF註冊成為資料發佈者。
關鍵字
occurrences; Observation; xprize-rainforest; final; manaus; brazil
聯絡資訊
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- Bioacoustician
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- Internship
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- Drone Operator
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- Drone operator
地理涵蓋範圍
The data was collected at Iranduba, State of Amazonas, 69405-000, Brazil
| 界定座標範圍 | 緯度南界 經度西界 [-2.96, -60.74], 緯度北界 經度東界 [-2.95, -60.73] |
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分類群涵蓋範圍
N/A
| Kingdom | Metazoa, Plantae |
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| Phylum | Arthropoda, Annelida, Chordata, Streptophyta |
| Class | Clitellata, Arachnida, Aves, Mammalia, Collembola, Amphibia, Pinopsida, Magnoliopsida, Insecta |
| Order | Symphypleona, Psocoptera, Dioscoreales, Hemiptera, Sarcoptiformes, Artiodactyla, Galliformes, Passeriformes, Chiroptera, Malpighiales, Apodiformes, Boraginales, Lamiales, Crassiclitellata, Thysanoptera, Nyctibiiformes, Rosales, Galbuliformes, Araneae, Lepidoptera, Cupressales, Diptera, Entomobryomorpha, Trogoniformes, Trichoptera, Tinamiformes, Fagales, Anura, Falconiformes, Myrtales, Orthoptera, Accipitriformes, Columbiformes, Charadriiformes, Hymenoptera, Psittaciformes, Caprimulgiformes, Fabales, Strigiformes, Coraciiformes, Piciformes |
| Family | Psittacidae, Hypericaceae, Mymaridae, Vireonidae, Thyropteridae, Plantaginaceae, Nyctibiidae, Mydidae, Dendrocolaptidae, Columbidae, Cupressaceae, Picidae, Cracidae, Fringillidae, Momotidae, Emballonuridae, Fabaceae, Glossoscolecidae, Chironomidae, Psittaciformes, Thamnophilidae, Gryllidae, Sciaridae, Tityridae, Phasianidae, Ramphastidae, Erebidae, Caprimulgidae, Isotomidae, Araneidae, Molossidae, Phalangopsidae, Cotingidae, Rhynchocyclidae, Pipridae, Tyrannidae, Laridae, Mogoplistidae, Bovidae, Nyctiibidae, Psocidae, Sarcophagidae, Thraupidae, Bignoniaceae, Trogonidae, Tettigoniidae, Melastomataceae, Vespertilionidae, Cicadidae, Thripidae, Romaleidae, Dolichopodidae, Fagaceae, Boraginaceae, Accipitridae, Cecidomyiidae, Moraceae, Dicyrtomidae, Hirundinidae, Oecanthidae, Strigidae, Trigonidiidae, Bucconidae, Tinamidae, Falconidae, Dioscoreaceae, Apodidae, Chloropidae, Hydropsychidae, Icteridae, TInamidae, Galbulidae, Leptodactylidae, Euphorbiaceae, Thamnophilinae, Pyroglyphidae, Juglandaceae, Formicidae |
時間涵蓋範圍
| 起始日期 / 結束日期 | 2024-07-17 / 2024-07-18 |
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計畫資料
The XPRIZE Rainforest competition is a contest where teams have 24 hours to obtain samples from a 100 ha area, without being able to physically enter the zone. The data was collected by monitoring platforms deployed by remotely operated drones during the first 24 hours of the competition. After the platforms were retrieved the data was analyzed in the subsequent 48 hours to report on the biodiversity and general health of the monitored area.
| 計畫名稱 | Species identification during the final stage of the 24 hour XPRIZE Rainforest competition in Manaus (Brazil) |
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| 辨識碼 | https://www.xprize.org/prizes/rainforest |
| 經費來源 | The participation in the competition was financed by the participating institutions themselves, with contributions from the XPRIZE when teams advanced to the semi-finals and to the final. |
| 研究區域描述 | The Iranduba area near Manaus in the state of Amazonas (Brazil) was selected by the XPRIZE organization, a 100 ha rectangular zone of flooded forest, as defined in the geographic coverage section. |
| 研究設計描述 | The objectives during the 24 hours of data collection were to collect audio recordings and organic material for eDNA analysis from 6 monitoring platforms installed in the tree canopy distributed over the competition area. Separate drone flights were organized to collect additional organic material from various spots in the competition area. |
參與計畫的人員:
取樣方法
Six monitoring stations (DROPs) were deployed covering the 100 ha competition area. Each DROP included a digital microphone sampling continuously at 192 kHz and 16 bits. The acoustic data was preprocessed on the DROP itself (sound level measurements, ecoacoustic indicators, acoustic classification), and processed further after recovery. The DROP also has a few "sticky" zones where organic material (mostly insects) can be collected. The systems were left in the trees during the night and recovered the following morning; all systems needed to be back in the base camp before noon local time.
| 研究範圍 | The Iranduba area near Manaus in the state of Amazonas (Brazil) was selected by the XPRIZE organization, a 100 ha rectangular zone of flooded forest, as defined in the geographic coverage section. |
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| 品質控管 | For the acoustic classifications an expert verified examples for each species. |
方法步驟描述:
- The acoustic data was processed by custom software written in C or Python. The classification was done through a CNN that was trained on data from various sources. In addition, the audio was processed by BirdNET. The GBIF dataset consists of results from both classifiers where we included the best example from each detected species at each DROP. The eDNA analysis utilizes universal primers to detect plants and animals in one single assay for a comprehensive species identification. The experimental workflow allowed for high sample throughput at high quality. This was achieved through a universal, field-ready DNA extraction protocol, pooled library preparation, efficient library normalization strategy and real time analyses and species identification during sequencing. The protocol is suitable for metabarcoding and barcoding, as well as long-range PCR. The implementation of long-range PCR has the potential to inform about population individual composition enabled by Nanopore's unique long-read capabilities.
額外的詮釋資料
| 維護說明 | The data set may be updated if further analysis results in additions or errors in the species classification. |
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| 替代的識別碼 | 10.15470/jjbagl |
| https://ipt.gbif.es/resource?r=upc-amazonia |