Description
These data are the result from the final stage (Manaus, Brazil) of the XPRIZE Rainforest competition. During 24 hours data was captured (predominantly audio and eDNA) and it was analyzed during the 48 hours afterwards. The data contains the unique species that were detected at each location through both methods.
Enregistrements de données
Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 347 enregistrements.
Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.
Versions
Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.
Comment citer
Les chercheurs doivent citer cette ressource comme suit:
André M, Esterci Ramalho E, Marquès-Bonet T, Hidalgo Hidalgo S, Erbs F, Storer E, van der Schaar M, Gomes L, Correa Acosta R, Batista Vieira C, Meloni Nassar P, Lizano Gonzalez E, Juan D, Esteban Wenge L, Da Silva Mendoza I, Fernando Saraiva de Menezes J, Sanchez Marrero A, Molina Cruz P, Fugarolas Vilà M (2024). XPRIZE Rainforest Brazil (Manaus) Final. Version 1.0. Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC). Occurrence dataset. https://doi.org/10.15470/jjbagl
Droits
Les chercheurs doivent respecter la déclaration de droits suivante:
L’éditeur et détenteur des droits de cette ressource est Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC). En vertu de la loi, l'éditeur a abandonné ses droits par rapport à ces données et les a dédié au Domaine Public (CC0 1.0). Les utilisateurs peuvent copier, modifier, distribuer et utiliser ces travaux, incluant des utilisations commerciales, sans aucune restriction.
Enregistrement GBIF
Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 8e86cea4-2c9c-47b2-953c-ce8394cbba13. Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC) publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du GBIF Spain.
Mots-clé
occurrences; Observation; xprize-rainforest; final; manaus; brazil
Contacts
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Couverture géographique
The data was collected at Iranduba, State of Amazonas, 69405-000, Brazil
| Enveloppe géographique | Sud Ouest [-2,96, -60,74], Nord Est [-2,95, -60,73] |
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Couverture taxonomique
N/A
| Kingdom | Metazoa, Plantae |
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| Phylum | Arthropoda, Annelida, Chordata, Streptophyta |
| Class | Clitellata, Arachnida, Aves, Mammalia, Collembola, Amphibia, Pinopsida, Magnoliopsida, Insecta |
| Order | Symphypleona, Psocoptera, Dioscoreales, Hemiptera, Sarcoptiformes, Artiodactyla, Galliformes, Passeriformes, Chiroptera, Malpighiales, Apodiformes, Boraginales, Lamiales, Crassiclitellata, Thysanoptera, Nyctibiiformes, Rosales, Galbuliformes, Araneae, Lepidoptera, Cupressales, Diptera, Entomobryomorpha, Trogoniformes, Trichoptera, Tinamiformes, Fagales, Anura, Falconiformes, Myrtales, Orthoptera, Accipitriformes, Columbiformes, Charadriiformes, Hymenoptera, Psittaciformes, Caprimulgiformes, Fabales, Strigiformes, Coraciiformes, Piciformes |
| Family | Psittacidae, Hypericaceae, Mymaridae, Vireonidae, Thyropteridae, Plantaginaceae, Nyctibiidae, Mydidae, Dendrocolaptidae, Columbidae, Cupressaceae, Picidae, Cracidae, Fringillidae, Momotidae, Emballonuridae, Fabaceae, Glossoscolecidae, Chironomidae, Psittaciformes, Thamnophilidae, Gryllidae, Sciaridae, Tityridae, Phasianidae, Ramphastidae, Erebidae, Caprimulgidae, Isotomidae, Araneidae, Molossidae, Phalangopsidae, Cotingidae, Rhynchocyclidae, Pipridae, Tyrannidae, Laridae, Mogoplistidae, Bovidae, Nyctiibidae, Psocidae, Sarcophagidae, Thraupidae, Bignoniaceae, Trogonidae, Tettigoniidae, Melastomataceae, Vespertilionidae, Cicadidae, Thripidae, Romaleidae, Dolichopodidae, Fagaceae, Boraginaceae, Accipitridae, Cecidomyiidae, Moraceae, Dicyrtomidae, Hirundinidae, Oecanthidae, Strigidae, Trigonidiidae, Bucconidae, Tinamidae, Falconidae, Dioscoreaceae, Apodidae, Chloropidae, Hydropsychidae, Icteridae, TInamidae, Galbulidae, Leptodactylidae, Euphorbiaceae, Thamnophilinae, Pyroglyphidae, Juglandaceae, Formicidae |
Couverture temporelle
| Date de début / Date de fin | 2024-07-17 / 2024-07-18 |
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Données sur le projet
The XPRIZE Rainforest competition is a contest where teams have 24 hours to obtain samples from a 100 ha area, without being able to physically enter the zone. The data was collected by monitoring platforms deployed by remotely operated drones during the first 24 hours of the competition. After the platforms were retrieved the data was analyzed in the subsequent 48 hours to report on the biodiversity and general health of the monitored area.
| Titre | Species identification during the final stage of the 24 hour XPRIZE Rainforest competition in Manaus (Brazil) |
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| Identifiant | https://www.xprize.org/prizes/rainforest |
| Financement | The participation in the competition was financed by the participating institutions themselves, with contributions from the XPRIZE when teams advanced to the semi-finals and to the final. |
| Description du domaine d'étude / de recherche | The Iranduba area near Manaus in the state of Amazonas (Brazil) was selected by the XPRIZE organization, a 100 ha rectangular zone of flooded forest, as defined in the geographic coverage section. |
| Description du design | The objectives during the 24 hours of data collection were to collect audio recordings and organic material for eDNA analysis from 6 monitoring platforms installed in the tree canopy distributed over the competition area. Separate drone flights were organized to collect additional organic material from various spots in the competition area. |
Les personnes impliquées dans le projet:
Méthodes d'échantillonnage
Six monitoring stations (DROPs) were deployed covering the 100 ha competition area. Each DROP included a digital microphone sampling continuously at 192 kHz and 16 bits. The acoustic data was preprocessed on the DROP itself (sound level measurements, ecoacoustic indicators, acoustic classification), and processed further after recovery. The DROP also has a few "sticky" zones where organic material (mostly insects) can be collected. The systems were left in the trees during the night and recovered the following morning; all systems needed to be back in the base camp before noon local time.
| Etendue de l'étude | The Iranduba area near Manaus in the state of Amazonas (Brazil) was selected by the XPRIZE organization, a 100 ha rectangular zone of flooded forest, as defined in the geographic coverage section. |
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| Contrôle qualité | For the acoustic classifications an expert verified examples for each species. |
Description des étapes de la méthode:
- The acoustic data was processed by custom software written in C or Python. The classification was done through a CNN that was trained on data from various sources. In addition, the audio was processed by BirdNET. The GBIF dataset consists of results from both classifiers where we included the best example from each detected species at each DROP. The eDNA analysis utilizes universal primers to detect plants and animals in one single assay for a comprehensive species identification. The experimental workflow allowed for high sample throughput at high quality. This was achieved through a universal, field-ready DNA extraction protocol, pooled library preparation, efficient library normalization strategy and real time analyses and species identification during sequencing. The protocol is suitable for metabarcoding and barcoding, as well as long-range PCR. The implementation of long-range PCR has the potential to inform about population individual composition enabled by Nanopore's unique long-read capabilities.
Métadonnées additionnelles
| Description de la fréquence de mise à jour | The data set may be updated if further analysis results in additions or errors in the species classification. |
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| Identifiants alternatifs | 10.15470/jjbagl |
| https://ipt.gbif.es/resource?r=upc-amazonia |