説明
These data are the result from the final stage (Manaus, Brazil) of the XPRIZE Rainforest competition. During 24 hours data was captured (predominantly audio and eDNA) and it was analyzed during the 48 hours afterwards. The data contains the unique species that were detected at each location through both methods.
データ レコード
この オカレンス（観察データと標本) リソース内のデータは、1 つまたは複数のデータ テーブルとして生物多様性データを共有するための標準化された形式であるダーウィン コア アーカイブ (DwC-A) として公開されています。 コア データ テーブルには、347 レコードが含まれています。
この IPT はデータをアーカイブし、データ リポジトリとして機能します。データとリソースのメタデータは、 ダウンロード セクションからダウンロードできます。 バージョン テーブルから公開可能な他のバージョンを閲覧でき、リソースに加えられた変更を知ることができます。
バージョン
次の表は、公にアクセス可能な公開バージョンのリソースのみ表示しています。
引用方法
研究者はこの研究内容を以下のように引用する必要があります。:
André M, Esterci Ramalho E, Marquès-Bonet T, Hidalgo Hidalgo S, Erbs F, Storer E, van der Schaar M, Gomes L, Correa Acosta R, Batista Vieira C, Meloni Nassar P, Lizano Gonzalez E, Juan D, Esteban Wenge L, Da Silva Mendoza I, Fernando Saraiva de Menezes J, Sanchez Marrero A, Molina Cruz P, Fugarolas Vilà M (2024). XPRIZE Rainforest Brazil (Manaus) Final. Version 1.0. Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC). Occurrence dataset. https://doi.org/10.15470/jjbagl
権利
研究者は権利に関する下記ステートメントを尊重する必要があります。:
パブリッシャーとライセンス保持者権利者は Laboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC)。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF登録
このリソースをはGBIF と登録されており GBIF UUID: 8e86cea4-2c9c-47b2-953c-ce8394cbba13が割り当てられています。 GBIF Spain によって承認されたデータ パブリッシャーとして GBIF に登録されているLaboratori d'Aplicacions Bioacustiques - Universitat Politècnica de Catalunya · Barcelona Tech (UPC) が、このリソースをパブリッシュしました。
キーワード
occurrences; Observation; xprize-rainforest; final; manaus; brazil
連絡先
- データ提供者 ●
- 最初のデータ採集者 ●
- 連絡先
- Director
- データ提供者 ●
- 最初のデータ採集者 ●
- 連絡先
- Director
- データ提供者 ●
- 最初のデータ採集者 ●
- 連絡先
- Researcher
- 最初のデータ採集者
- Administrator
- 最初のデータ採集者
- Bioacoustician
- 最初のデータ採集者
- Internship
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Researcher
- 最初のデータ採集者
- Drone Operator
- 最初のデータ採集者
- Drone operator
地理的範囲
The data was collected at Iranduba, State of Amazonas, 69405-000, Brazil
| 座標（緯度経度） | 南 西 [-2.96, -60.74], 北 東 [-2.95, -60.73] |
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生物分類学的範囲
N/A
| Kingdom | Metazoa, Plantae |
|---|---|
| Phylum | Arthropoda, Annelida, Chordata, Streptophyta |
| Class | Clitellata, Arachnida, Aves, Mammalia, Collembola, Amphibia, Pinopsida, Magnoliopsida, Insecta |
| Order | Symphypleona, Psocoptera, Dioscoreales, Hemiptera, Sarcoptiformes, Artiodactyla, Galliformes, Passeriformes, Chiroptera, Malpighiales, Apodiformes, Boraginales, Lamiales, Crassiclitellata, Thysanoptera, Nyctibiiformes, Rosales, Galbuliformes, Araneae, Lepidoptera, Cupressales, Diptera, Entomobryomorpha, Trogoniformes, Trichoptera, Tinamiformes, Fagales, Anura, Falconiformes, Myrtales, Orthoptera, Accipitriformes, Columbiformes, Charadriiformes, Hymenoptera, Psittaciformes, Caprimulgiformes, Fabales, Strigiformes, Coraciiformes, Piciformes |
| Family | Psittacidae, Hypericaceae, Mymaridae, Vireonidae, Thyropteridae, Plantaginaceae, Nyctibiidae, Mydidae, Dendrocolaptidae, Columbidae, Cupressaceae, Picidae, Cracidae, Fringillidae, Momotidae, Emballonuridae, Fabaceae, Glossoscolecidae, Chironomidae, Psittaciformes, Thamnophilidae, Gryllidae, Sciaridae, Tityridae, Phasianidae, Ramphastidae, Erebidae, Caprimulgidae, Isotomidae, Araneidae, Molossidae, Phalangopsidae, Cotingidae, Rhynchocyclidae, Pipridae, Tyrannidae, Laridae, Mogoplistidae, Bovidae, Nyctiibidae, Psocidae, Sarcophagidae, Thraupidae, Bignoniaceae, Trogonidae, Tettigoniidae, Melastomataceae, Vespertilionidae, Cicadidae, Thripidae, Romaleidae, Dolichopodidae, Fagaceae, Boraginaceae, Accipitridae, Cecidomyiidae, Moraceae, Dicyrtomidae, Hirundinidae, Oecanthidae, Strigidae, Trigonidiidae, Bucconidae, Tinamidae, Falconidae, Dioscoreaceae, Apodidae, Chloropidae, Hydropsychidae, Icteridae, TInamidae, Galbulidae, Leptodactylidae, Euphorbiaceae, Thamnophilinae, Pyroglyphidae, Juglandaceae, Formicidae |
時間的範囲
| 開始日 / 終了日 | 2024-07-17 / 2024-07-18 |
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プロジェクトデータ
The XPRIZE Rainforest competition is a contest where teams have 24 hours to obtain samples from a 100 ha area, without being able to physically enter the zone. The data was collected by monitoring platforms deployed by remotely operated drones during the first 24 hours of the competition. After the platforms were retrieved the data was analyzed in the subsequent 48 hours to report on the biodiversity and general health of the monitored area.
| タイトル | Species identification during the final stage of the 24 hour XPRIZE Rainforest competition in Manaus (Brazil) |
|---|---|
| 識別子 | https://www.xprize.org/prizes/rainforest |
| ファンデイング | The participation in the competition was financed by the participating institutions themselves, with contributions from the XPRIZE when teams advanced to the semi-finals and to the final. |
| Study Area Description | The Iranduba area near Manaus in the state of Amazonas (Brazil) was selected by the XPRIZE organization, a 100 ha rectangular zone of flooded forest, as defined in the geographic coverage section. |
| 研究の意図、目的、背景など（デザイン） | The objectives during the 24 hours of data collection were to collect audio recordings and organic material for eDNA analysis from 6 monitoring platforms installed in the tree canopy distributed over the competition area. Separate drone flights were organized to collect additional organic material from various spots in the competition area. |
プロジェクトに携わる要員:
収集方法
Six monitoring stations (DROPs) were deployed covering the 100 ha competition area. Each DROP included a digital microphone sampling continuously at 192 kHz and 16 bits. The acoustic data was preprocessed on the DROP itself (sound level measurements, ecoacoustic indicators, acoustic classification), and processed further after recovery. The DROP also has a few "sticky" zones where organic material (mostly insects) can be collected. The systems were left in the trees during the night and recovered the following morning; all systems needed to be back in the base camp before noon local time.
| Study Extent | The Iranduba area near Manaus in the state of Amazonas (Brazil) was selected by the XPRIZE organization, a 100 ha rectangular zone of flooded forest, as defined in the geographic coverage section. |
|---|---|
| Quality Control | For the acoustic classifications an expert verified examples for each species. |
Method step description:
- The acoustic data was processed by custom software written in C or Python. The classification was done through a CNN that was trained on data from various sources. In addition, the audio was processed by BirdNET. The GBIF dataset consists of results from both classifiers where we included the best example from each detected species at each DROP. The eDNA analysis utilizes universal primers to detect plants and animals in one single assay for a comprehensive species identification. The experimental workflow allowed for high sample throughput at high quality. This was achieved through a universal, field-ready DNA extraction protocol, pooled library preparation, efficient library normalization strategy and real time analyses and species identification during sequencing. The protocol is suitable for metabarcoding and barcoding, as well as long-range PCR. The implementation of long-range PCR has the potential to inform about population individual composition enabled by Nanopore's unique long-read capabilities.
追加のメタデータ
| メンテナンス内容 | The data set may be updated if further analysis results in additions or errors in the species classification. |
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| 代替識別子 | 10.15470/jjbagl |
| https://ipt.gbif.es/resource?r=upc-amazonia |