PAMP-tracheo: Vascular plants in Pamplona and surroundings (Navarra, Spain). Undergraduate thesis, R. Mayo

Occurrence
Dernière version Publié par University of Navarra – Department of Environmental Biology le nov. 30, 2018 University of Navarra – Department of Environmental Biology
Date de publication:
30 novembre 2018
Licence:
CC-BY 4.0

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Description

This dataset provides information about 2287 preserved specimens from 509 species and subspecies and 61 families of vascular plants. The specimens were collected in the undergraduate thesis project of Mayo (1978), which assessed the vascular plants of the city of Pamplona and surroundings (Navarra, northern Spain).

Enregistrements de données

Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 2 287 enregistrements.

Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.

Versions

Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.

Comment citer

Les chercheurs doivent citer cette ressource comme suit:

Ibáñez R, Imas M, López M L, Mayo R M (2018): PAMP-tracheo: Vascular plants in Pamplona and surroundings (Navarra, Spain). Undergraduate thesis, R. Mayo. v1.2. University of Navarra – Department of Environmental Biology. Dataset/Occurrence. https://doi.org/10.15470/zhbplm

Droits

Les chercheurs doivent respecter la déclaration de droits suivante:

L’éditeur et détenteur des droits de cette ressource est University of Navarra – Department of Environmental Biology. Ce travail est sous licence Creative Commons Attribution (CC-BY) 4.0.

Enregistrement GBIF

Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : a4442622-3162-4b2e-b47b-29828f7bb853.  University of Navarra – Department of Environmental Biology publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du GBIF Spain.

Mots-clé

Occurrence; Specimen; flora; herbarium; Navarra; northern Spain; Pamplona; vascular plants

Contacts

Ricardo Ibáñez
  • Fournisseur Des Métadonnées ●
  • Créateur ●
  • Personne De Contact
Associate Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
http://orcid.org/0000-0002-1772-4473
María Imas
  • Fournisseur Des Métadonnées ●
  • Créateur
Technician
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
María Luisa López
  • Créateur
Emeritous Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
Rosa María Mayo
  • Créateur
Student
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
Leticia Orradre
  • Processeur
Technician
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600

Couverture géographique

Specimens were collected in the city of Pamplona (Navarra, northern Spain) and sourroundings. The site studied covers an area of over 23 km2. Country: Spain. Province: Navarra (N Spain). Municipality: Pamplona and other municipalities nearby.

Enveloppe géographique Sud Ouest [42,697, -1,827], Nord Est [43,029, -1,491]

Couverture taxonomique

Out of a total of 2287 specimens, 2274 were identified to species or subspecies level. They belong to 509 species or subspecies and 61 families of vascular plants.

Phylum Tracheophyta (vascular plants)
Class Equisetopsida (horsetails), Liliopsida (monocots), Magnoliopsida (dicotyledons), Polypodiopsida (modern ferns)

Couverture temporelle

Date de début / Date de fin 1974-05-25 / 1978-11-27

Données sur le projet

The vascular flora of the city of Pamplona (northern Spain) and surroundings was assessed. An inventory was conducted based on fieldwork and taxa were identified.

Titre Undergraduate thesis project R.M. Mayo: “Flora vascular de Pamplona y sus alrededores”.
Financement Digitization and georeferencing of the herbarium specimens have been supported through the project: “Informatización y adecuación a la red GBIF de colecciones de plantas vasculares depositadas en el herbario de la Universidad de Navarra-PAMP. Fase II”. Reference: CGL2011-15056-E. Ministerio de Economía y Competitividad. Gobierno de España. Principal investigator: Ricardo Ibáñez.
Description du domaine d'étude / de recherche The city is in the middle of Navarra (northern Spain), at 450 m.a.s.l., and is surrounded by a mountain belt with a height of about 1000 m.a.s.l. The area studied is close to the boundary between the Mediterranean and Eurosiberian biogeographical regions. The climate of Pamplona is oceanic with Mediterranean influences of some drier months in summer.

Les personnes impliquées dans le projet:

Rosa María Mayo
  • Chercheur Principal
María Luisa López
  • Chercheur Principal
María Imas
  • Conservateur
Leticia Romeo Orradre
  • Processeur
Ricardo Ibáñez
  • Chercheur Principal

Méthodes d'échantillonnage

Samples were collected between the years 1974 and 1978, but most of the specimens were collected in the last two years.

Etendue de l'étude The specimens were collected in the city of Pamplona (Navarra, northern Spain) and surroundings.

Description des étapes de la méthode:

  1. Plant collection. Plant vouchers were selected and collected in the field.
  2. Identification to species or subspecies level. Identification was performed between 1974 and 1978 mainly by R.M. Mayo and M.L. López using Flora europaea (Tutin et al. 1964-1976) and Flore de la France (Coste 1900-1906).
  3. Plant conservation. Specimens were dried and pressed for conservation using standard protocols. Vouchers were deposited in the herbarium of the University of Navarra.
  4. Numbering and digitization of vouchers. From 2012 to date, each specimen was labelled, with a unique collection number, and digitized, using HERBAR software (v3.7.1 Pando et al. 1994-2010).
  5. Revision of species identification. Original identification of some herbarium specimens was revised. Between June 2013 and January 2018, the identification of 49 specimens was corrected and refined in 54, either by providing the specific or the subspecific epithet.
  6. Nomenclature was updated using Flora iberica (Castroviejo 1986-2015).
  7. Names of municipalities, localities and place names were updated according to Toponimia Oficial de Navarra (http://toponimianavarra.tracasa.es/).
  8. Georeferencing. Localities were georeferenced using geographic or UTM or coordinates. Datum and uncertainty were also assigned.
  9. Internet exportation. Data were exported from the HERBAR database under a Darwin Core format (Wieczorek et al. 2012).
  10. Data checking and validation. Coordinates, characters and format of dates were checked for possible mistakes using Darwin test software (v3.3, Ortega-Maqueda & Pando 2008). This software allowed validating data in the Darwin Core format.
  11. Metadata were documented and the dataset was published in the GBIF data portal using the Integrated Publishing Toolkit (IPT v2.3.5) of GBIF.es (http://ipt.gbif.es/).

Données de collection

Nom de la collection Herbario PAMP: colección PAMPLONA_Mayo
Méthode de conservation des spécimens Dried and pressed
Unités de conservation Compteur 2 287 incertitude (+/-) 1 sheets

Citations bibliographiques

  1. Mayo RM (1978): Flora vascular de Pamplona y alrededores. Undergraduate thesis. University of Navarra.
  2. Coste H (1900-1906). Flore descriptive et illustrée de la France, de la Corse et des contrées limitrophes. Libr. Des Scien. Nat. P. Klincksieek. Paris.
  3. Ortega-Maqueda I, Pando F (2008): DARWIN TEST (3.3): Una aplicación para la validación y el chequeo de los datos en formato Darwin Core 1.2, Darwin Core 1.4 o Darwin Core Archive. Unidad de Coordinación de GBIF.ES, CSIC, Ministerio de Economía y Competitividad, España. http://www.gbif.es/Darwin_test/Darwin_test.php
  4. Pando F et al. (1994–2010): HERBAR (3.7): Una aplicación de bases de datos para gestión de herbarios. Unidad de Coordinación de GBIF.ES, CSIC, Ministerio de Ciencia e Innovación, España. http://www.gbif.es/herbar/herbar.php
  5. Tutin TG, Heywood VH, Burges NA, Moore DM,Valentine DH, Walters SM & Webb DA (eds.) (1964-1976): Flora Europaea, Vols. 1-4, Cambridge UniversityPress, Cambridge.
  6. Wieczorek J, Bloom D, Guralnick R, Blum S, Döring M, Giovanni R, Robertson T, Vieglais D (2012): Darwin Core: An evolving community-developed biodiversity data standard. PLoS ONE 7(1): e29715. https://doi.org/10.1371/journal.pone.0029715

Métadonnées additionnelles

The origin of the PAMP Herbarium dates back to the arrival at the University of Navarra by Professor T.M. Losa España in 1964. One year later M.L. López Fernández began her doctoral thesis, maintaining her contributions to the herbarium uninterruptedly for several decades. Most of the material deposited in the herbarium comes from collections made by researchers from the Department of Environmental Biology (formerly Department of Botany) of the University of Navarra, as a result of theses and dissertations generally carried out in the territory of the Autonomous Community of Navarra (Spain). The herbarium store c. 100 000 sheets with dried specimens. The digitisation of the specimens has been done through the HERBAR v3.7.1 software (Pando et al., 1994-2010) and was supported by the Spanish Government (CGL2007-30978-E, CGL2009-08507-E and CGL2011-15056-E).

Identifiants alternatifs doi:10.15470/zhbplm
a4442622-3162-4b2e-b47b-29828f7bb853
https://ipt.gbif.es/resource?r=pamp-tracheo-pamplona_rm