Registros biológicos

PAMP-tracheo: Vascular plants in the research project on dark diversity of plant communities in the centre-east of Navarra (Spain)

Última versión Publicado por University of Navarra – Department of Environmental Biology en 17 de enero de 2022 University of Navarra – Department of Environmental Biology
This dataset provides information about 1517 preserved specimens from 491 species and subspecies and 72 families of vascular plants. The specimens were collected from 2019 to 2021 in 96 plots located in the centre-east of Navarra (northern Spain).

Registros

Los datos en este recurso de registros biológicos han sido publicados como Archivo Darwin Core(DwC-A), el cual es un formato estándar para compartir datos de biodiversidad como un conjunto de una o más tablas de datos. La tabla de datos del core contiene 1.517 registros.

Este IPT archiva los datos y, por lo tanto, sirve como repositorio de datos. Los datos y los metadatos del recurso están disponibles para su descarga en la sección descargas. La tabla versiones enumera otras versiones del recurso que se han puesto a disposición del público y permite seguir los cambios realizados en el recurso a lo largo del tiempo.

Descargas

Descargue la última versión de los datos como un Archivo Darwin Core (DwC-A) o los metadatos como EML o RTF:

Datos como un archivo DwC-A descargar 1.517 registros en Inglés (123 kB) - Frecuencia de actualización: cuando sea necesario
Metadatos como un archivo EML descargar en Inglés (20 kB)
Metadatos como un archivo RTF descargar en Inglés (18 kB)

Versiones

La siguiente tabla muestra sólo las versiones publicadas del recurso que son de acceso público.

¿Cómo referenciar?

Los usuarios deben citar este trabajo de la siguiente manera:

Ibáñez R, Valerio M, Imas M (2022): PAMP-tracheo: Vascular plants in the research project on dark diversity of plant communities in the centre-east of Navarra (Spain). v1.0. University of Navarra – Department of Environmental Biology. Dataset/Occurrence. https://doi.org/10.15470/pxktos

Derechos

Los usuarios deben respetar los siguientes derechos de uso:

El publicador y propietario de los derechos de este trabajo es University of Navarra – Department of Environmental Biology. Este trabajo está autorizado bajo una Licencia Creative Commons Atribución/Reconocimiento 4.0 Internacional (CC-BY) 4.0.

Registro GBIF

Este recurso ha sido registrado en GBIF con el siguiente UUID: bd3933fb-607e-491b-9009-9c08d608d04b.  University of Navarra – Department of Environmental Biology publica este recurso y está registrado en GBIF como un publicador de datos avalado por GBIF Spain.

Palabras clave

Occurrence; Specimen; dark diversity; flora; herbarium; Navarra; northern Spain; permanent plots; vascular plants

Contactos

¿Quién creó el recurso?:

Ricardo Ibáñez
Associate Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
Mercedes Valerio
Researcher
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
María Imas
Technician
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600

¿Quién puede resolver dudas acerca del recurso?:

Ricardo Ibáñez
Associate Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600

¿Quién documentó los metadatos?:

Ricardo Ibáñez
Associate Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
María Imas
Technician
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600

Cobertura geográfica

Specimens were collected in the centre-east of Navarra (northern Spain). The site studied covers an area of 314 km2, defined by a circle of 10 km radius.

Coordenadas límite Latitud Mínima Longitud Mínima [42,619, -1,325], Latitud Máxima Longitud Máxima [42,795, -1,097]

Cobertura taxonómica

Out of a total of 1517 specimens, all were identified to species or subspecies level. They belong to 491 species or subspecies and 72 families of vascular plants.

Filo  Tracheophyta (vascular plants)
Class  Equisetopsida (horsetails),  Liliopsida (monocots),  Magnoliopsida (dicotyledons),  Pinopsida (conifers),  Polypodiopsida (modern ferns)

Cobertura temporal

Fecha Inicial / Fecha Final 2019-05-20 / 2021-06-11

Datos del proyecto

The dark diversity of plant communities was explored in the centre-east of the Navarra region (northern Spain). An inventory was conducted based on fieldwork and taxa were identified. The complete dataset was contributed to the DarkDivNet research network which aims to explore the dark diversity of plant communities at a global scale (https://macroecology.ut.ee/en/darkdivnet/).

Título Exploring the dark diversity of plant communities in the centre-east of Navarra (Spain)
Identificador -
Fuentes de Financiación This research was funded by University of Navarra (project “Red de Observatorios de la Biodiversidad de Navarra (ROBIN)”). Mercedes Valerio was supported by a predoctoral grant of Departamento de Educación, Gobierno de Navarra (“Ayudas predoctorales para la realización de programas de doctorado de interés para Navarra; Plan de Formación y de I+D 2018”).
Descripción del área de estudio The area studied is located in the centre-east Navarra (northern Spain) and is centred in the municipality of Romanzado. Altitude ranges from 441 to 1228 m.a.s.l. The bedrock is mainly composed of limestones, marls, flysch, sandstones and clays (Cenozoic). Climate is Mediterranean, characterized by dry summers and cold winters. Mean annual temperature ranges from 9.4 to 19.9ºC, and mean annual precipitation ranges from 695 to 886 mm. The site is located in the boundary between the Eurosiberian and Mediterranean biogeographic regions and vegetation is dominated by evergreen oak forest (Quercus rotundifolia), downy oak forest (Q. pubescens) and European beech forest (Fagus sylvatica). Traditional management consisted in extensive sheep and cattle grazing although grazing cessation is general throughout the region.
Descripción del diseño In 2019 and 2020, 90 co-occurrence plots of 10 x 10 m were studied, as well as 6 permanent plots of the same size. Co-occurrence plots were randomly selected from an area of 10 km radius around the centre of the study area (defined as the midpoint of the permanent sites), including relatively undisturbed natural or semi-natural vegetation of any kind, with plots located in different habitats. Permanent plots were selected in three habitat types relatively frequent in the study area. Each of these three typical target habitats were sampled by pairs of permanent sites (localities) each one under different anthropogenic disturbance conditions (relatively natural vs. disturbed). Species cover was estimated in each plot for all vascular plants present. Plots were studied in spring season.

Personas asociadas al proyecto:

Investigador Principal
Ricardo Ibáñez
Investigador Principal
Mercedes Valerio
Procesador
María Imas

Métodos de muestreo

All vascular plants present in each plot were identified. Plant specimens were collected for appropriate identification and voucher.

Área de Estudio The specimens were collected in an area of 314 km2, defined by a circle of 10 km radius, centred in the municipality of Romanzado (centre-east Navarra, Spain). Samples were collected between the years 2019 and 2021, on a yearly basis.

Descripción de la metodología paso a paso:

  1. Plant collection. Plant vouchers were selected and collected in the field.
  2. Identification to species or subspecies level. Identification was performed between 2019 and 2021 by R. Ibáñez according to Flora iberica (Castroviejo 1986-2021).
  3. Plant conservation. Specimens were dried and pressed for conservation using standard protocols. Vouchers were deposited in the herbarium of the University of Navarra (PAMP).
  4. Numbering and digitization of vouchers. From 2019 to date, each specimen was labelled, with a unique collection number, and digitized, using Elysia software (v2.0 Pando et al.).
  5. Species identification. Identification of herbarium specimens was done using Flora iberica (Castroviejo 1986-2021).
  6. Names of municipalities, localities and place names were standardized according to Toponimia Oficial de Navarra (http://toponimianavarra.tracasa.es/).
  7. Georeferencing. Localities were georeferenced using geographic coordinates. Datum and uncertainty were also assigned.
  8. Internet exportation. Data were exported from the Elysia database under a Darwin Core format (Wieczorek et al. 2012).
  9. Data checking and validation. Coordinates, characters and format of dates were checked for possible mistakes using Darwin test software (v3.4 Pando et al.). This software allowed validating data in the Darwin Core format.
  10. Metadata were documented and the dataset was published in the GBIF data portal using the Integrated Publishing Toolkit (IPT v2.5.2) of GBIF.es (http://ipt.gbif.es/).

Datos de la colección

Nombre de la Colección PAMP-tracheo: Plantas vasculares del proyecto de investigación sobre diversidad oculta de comunidades vegetales en el centro-este de Navarra (España)
Identificador de la Colección PAMP: TRACHEO_DarkDivNet_D145_RIMV
Identificador de la Colección Parental PAMP: TRACHEO
Métodos de preservación de los ejemplares Secado y prensado
Unidades curatoriales Conteo 1.517 +/- 1 sheets

Referencias bibliográficas

  1. Castroviejo S (coord.) (1986-2021): Flora iberica. Vols. 1-21. Real Jardín Botánico, CSIC. Madrid. URI: http://hdl.handle.net/10261/131558
  2. Pando F., Lujano M., Cezón K. Darwin Test (3.4): una aplicación para la validación y chequeo de los datos en formato Darwin Core (consulta: 17/12/2021). GBIF.ES. Real Jardín Botánico (CSIC). Ministerio de Ciencia e Innovación. URI: https://www.gbif.es/software/darwin-test/
  3. Pando F, Lujano M, Cezón K: Elysia (2.0): una aplicación para la gestión completa de colecciones biológicas (consulta: 30/11/2021). GBIF.ES - CSIC. Ministerio de Ciencia e Innovación. URI: https://www.gbif.es/software/elysia/
  4. Wieczorek J, Bloom D, Guralnick R, Blum S, Döring M, Giovanni R, Robertson T, Vieglais D (2012): Darwin Core: An evolving community-developed biodiversity data standard. PLoS ONE 7(1): e29715. https://doi.org/10.1371/journal.pone.0029715

Metadatos adicionales

The origin of the PAMP Herbarium dates back to the arrival at the University of Navarra by Professor T.M. Losa España in 1964. One year later M.L. López Fernández began her doctoral thesis, maintaining her contributions to the herbarium uninterruptedly for several decades. Most of the material deposited in the herbarium comes from collections made by researchers from the Department of Environmental Biology (formerly Department of Botany) of the University of Navarra, as a result of theses and dissertations generally carried out in the territory of the Autonomous Community of Navarra (Spain). The herbarium store c. 100 000 sheets with dried specimens. The digitisation of the specimens is done through the Elysia v2.0 software (Pando et al.) and was partially supported by the Spanish Government (CGL2007-30978-E, CGL2009-08507-E and CGL2011-15056-E).

Identificadores alternativos 10.15470/pxktos
https://ipt.gbif.es/resource?r=pamp-tracheo-ddn145-rimv