Dataset of Iberian ibex population in Sierra Nevada (Spain)

Última versión Publicado por Sierra Nevada Global Change Observatory. Andalusian Environmental Center, University of Granada, Regional Government of Andalusia en Mar 27, 2020 Sierra Nevada Global Change Observatory. Andalusian Environmental Center, University of Granada, Regional Government of Andalusia

This dataset provides information about Iberian ibex (Capra pyrenaica hispanica Schimper, 1848) presence in Sierra Nevada (SE Iberian Peninsula), as a result of annual sampling from 1993 to 2018 done by the managers of the Sierra Nevada Natural and National Park. They carried out the transects collecting different variables such as the number of individuals observed, the perpendicular distance of each group of goats to the transect line and, at an individual level, sex as well as age in the case of males. These data allowed us for calculate population parameters such as density, sex ratio, birth rate and age structure. These parameters are key for Iberian ibex conservation and management, given that Sierra Nevada harbours the largest population of this species in the world. The set of data we present is structured using the Darwin Core biological standard, which contains 11,123 occurrences from 88 transects distributed along Sierra Nevada mountain range. Additionally, information about group types (categorized by sex and age) and size can be queried.

Registros

Los datos en este evento de muestreo recurso han sido publicados como Archivo Darwin Core(DwC-A), el cual es un formato estándar para compartir datos de biodiversidad como un conjunto de una o más tablas de datos. La tabla de datos del core contiene 3,091 registros. también existen 2 tablas de datos de extensiones. Un registro en una extensión provee información adicional sobre un registro en el core. El número de registros en cada tabla de datos de la extensión se ilustra a continuación.

  • Event (core)
    3091
  • Occurrence 
    5396
  • ExtendedMeasurementOrFact 
    2502

Este IPT archiva los datos, sirviendo así como repositorio de datos. Los datos y metadatos están disponibles para descargar en la sección de descargas. La tabla de versiones muestra otras versiones del recurso que se han hecho accesibles al público y permite el seguimiento de los cambios hechos al recurso en el tiempo.

Descargas

Descargue la última versión de los datos como un Archivo Darwin Core (DwC-A) o los metadatos como EML o RTF:

Datos como un archivo DwC-A descargar 3,091 registros en Inglés (10 MB) - Frecuencia de actualización: desconocido
Metadatos como un archivo EML descargar en Inglés (23 KB)
Metadatos como un archivo RTF descargar en Inglés (22 KB)

Versiones

La siguiente tabla muestra sólo las versiones publicadas del recurso que son de acceso público.

¿Cómo referenciar?

Los usuarios deben citar este trabajo de la siguiente manera:

Granados Torres J E (2020): Dataset of Iberian ibex population in Sierra Nevada (Spain). v1.5. Sierra Nevada Global Change Observatory. Andalusian Environmental Center, University of Granada, Regional Government of Andalusia. Dataset/Samplingevent. https://doi.org/10.15470/3ucqfm

Derechos

Los usuarios deben respetar los siguientes derechos de uso:

El publicador y propietario de los derechos de este trabajo es Sierra Nevada Global Change Observatory. Andalusian Environmental Center, University of Granada, Regional Government of Andalusia. To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.

Registro GBIF

Este recurso ha sido registrado en GBIF con el siguiente UUID: 5fe81b76-6d2f-4f09-a9e3-301e8e1eb918.  Sierra Nevada Global Change Observatory. Andalusian Environmental Center, University of Granada, Regional Government of Andalusia publica este recurso, y está registrado en GBIF como un publicador de datos avalado por GBIF Spain.

Palabras Clave

Capra pyrenaica; Sierra Nevada; long term monitoring; population parameters; Iberian Peninsula; demographic time series; population trends; demographic structure; National Park; conservation and management; Capra pyrenaica; Sierra Nevada; Long term monitoring; Population parameters; Iberian Peninsula; Population trends; National Park; Conservation and management; Distance sampling; FAIR principles; Historical monitoring data; Southern Spain

Contactos

¿Quién creó el recurso?:

José Enrique Granados Torres
Sierra Nevada National Park Technician
Board of Agriculture, Livestock, Fisheries and Sustainable Development of the Regional Government of Andalusia Ctra. antigua de Sierra Nevada, Km 7. 18191 Pinos Genil Granada ES +0034 697956343

¿Quién puede resolver dudas acerca del recurso?:

José Enrique Granados Torres
Sierra Nevada National Park Technician
Board of Agriculture, Livestock, Fisheries and Sustainable Development of the Regional Government of Andalusia Ctra. antigua de Sierra Nevada, Km 7. 18191 Pinos Genil Granada ES +0034 697956343

¿Quién documentó los metadatos?:

José Enrique Granados Torres
Sierra Nevada National Park Technician
Board of Agriculture, Livestock, Fisheries and Sustainable Development of the Regional Government of Andalusia Ctra. antigua de Sierra Nevada, Km 7. 18191 Pinos Genil Granada ES +0034 697956343

¿Quién más está asociado con el recurso?:

Originador
José Enrique Granados Torres
Sierra Nevada National Park Technician
Board of Agriculture, Livestock, Fisheries and Sustainable Development of the Regional Government of Andalusia Ctra. antigua de Sierra Nevada, Km 7. 18191 Pinos Genil Granada ES +0034 697956343

Cobertura Geográfica

The geographical area where the dataset was obtained corresponds to Sierra Nevada: a mountainous region located in the southeast of the Iberian Peninsula (37°14'-36°54' N; 2°37'-3°39' W) within the Baetic System, in the called Penibaetic mountain ranges, near to the Mediterranean Sea. In Sierra Nevada are the highest summits of the Iberian Peninsula, reaching the Mulhacén 3,479 m a.s.l. and being, after the alpine mountain region, the highest mountain range in Europe.

Coordenadas límite Latitud Mínima Longitud Mínima [36.901, -3.564], Latitud Máxima Longitud Máxima [37.19, -2.63]

Cobertura Taxonómica

The Iberian ibex (Capra pyrenaica hispanica) is an endemic mountain and intermediate sized ungulate, widely distributed throughout much of the Mediterranean mountain ranges of the Iberian Peninsula.

Subespecie  Capra pyrenaica hispanica (Iberian ibex)

Cobertura Temporal

Fecha Inicial / Fecha Final 1993-07-08 / 2018-11-07

Datos del Proyecto

The main goal of these projects is to monitor ungulate populations in Sierra Nevada National Park.

Título Plan de Gestión de Ungulados Silvestres en el Parque Nacional de Sierra Nevada
Identificador 30_00; 10050010; 10040016; 676/2006/A/00; 1571/2007/M/00; 173/2009/M/00; 861/11/M/00; 03/15/M/00; 2016 _00014_M; 2017-00189-M
Descripción del Área de Estudio The climate is Mediterranean; its mountainous condition gives it the characteristics of a continental climate. Biogeographically, five of the six thermotypes defined for the Mediterranean region appear in Sierra Nevada, from the thermomediterranean in the lowest and driest areas of the east to the crioromediterranean in the highest peaks (Rivas-Martínez, 1987). The mean precipitation gives rise to a dry and subhumid ombrotype, although there are exceptions due to extreme drought (eastern part) and to areas with mean precipitation of more than 1,000 mm/year. Topographically is a heterogeneous area, with strong climatic contrasts between the sunny, dry south-facing slopes and the shaded, wetter north-facing slopes. Sierra Nevada is an important diversity hotspot in the Mediterranean region, with unique ecosystems and endemic species. Overall, Sierra Nevada comprises 27 habitats types from the habitat directive (Annex I of Directive 92/43/CEE). The mountain goat is distributed in Sierra Nevada from the summits to the bottom of the valleys, depending on the seasonality of the ecosystem.
Descripción del Diseño Four different stages in the monitoring of the ibex population can be considered chronologically in Sierra Nevada, characterized by changes in environmental-protection categories and the methodology used to estimate the number of individuals. An initial stage (19th century to first half of the 20th century) includes ibex presence or absence data in particular sites of Sierra Nevada. The second stage (1960-1996) comprises the population inventories of the number of ibex present in the 35,000 hectares of the former National Hunting Reserve. The third stage began in 1989 with the declaration of Sierra Nevada as a Natural Park, with an area of ca. 172,000 hectares, that is where Distance Sampling has been undertaken since 1993 to estimate the size of this ibex population. The fourth stage began in 1999 with the declaration of part of Sierra Nevada mountain range as a National Park. This new category of protection has not entailed changes in the methodology used to estimate the size of the population, although it has implied a new management model combining one territory where sport hunting is prohibited (National Park) with another where this activity is permitted (Natural Park). This sector has been favoured by improved management of the species as a whole.

Personas asociadas al proyecto:

Originador
José Enrique Granados Torres

Métodos de Muestreo

Sampling based on linear transects has been used since the early 1930s. This method has proved practical, efficient, and relatively inexpensive (Anderson et al. 1979; Burnham et al. 1980). In addition, it was recommended because it provides the ability to control the reliability of the results (Burnham et al. 1980), this being the main reason to use the Distance Sampling in the census of wild ungulates (Escós and Alados, 1988; Fandos, 1991). In Sierra Nevada, the linear transects method for estimating the size of the ibex population was first used in 1993 (Pérez et al. 1994). A more detailed explanation of the methodology can be found in the Plan específico de gestión de la población de cabra montés (Capra pyrenaica) en el Parque Nacional de Sierra Nevada (Granados et al. 2001) (Specific Management Plan for the Iberian ibex [Capra pyrenaica] population in Sierra Nevada National Park) and in the monitoring methodologies of the Sierra Nevada Global-Change Observatory (Granados et al. 2012). The sampling design (length and location of transects) was carried out following criteria of randomness and stratification. From 2008 onwards, 33 transects were fixed and are sampled every year whenever the weather conditions allow.

Área de Estudio There are 88 transects constantly sampled since 1993, of which 33 have been constantly sampled since 2008. They were classified by the most predominant habitats in the area covered by each transect. Type of habitats are forest, high mountain grasslands, high mountain shrubland, high mountain shrubland and forest, high mountain shrubland and high mountain grasslands, mountain crops, mid mountain scrubland and finally mid mountain scrubland and forest. The representation of the shape (multilinestring) can be found in the footprintWKT element of Darwing Core.
Control de Calidad Different validation processes were applied in the data cycle stages described below: (a) During the sampling, the observers fundamentally do cross-checking of observations in situ. (b) In the second step, due to the large volume of data, we implement some controls and validation rules in the Access form in order to reduce human errors and facilitate the digitalisation: - Input masks to control data entry formats (especially date/time data type). - We define required fields (e.g. transect number and sampling date). - We provide lists of predefined values (e.g. group types: male alone, female alone, males, females, females with kids, and mixed groups). - We establish some “control fields”, that is, variables that whoever digitalise the data calculate manually to facilitate the information identification. For instance: before introducing the observations, the person had to indicate the total number of groups identified in each survey; the size of each group; the type of group categorised by sex and age; etc. (c) As for transects, a more accurate digitalisation was carried out at a scale of 1:1000 in ArcGIS 10.2 (ESRI, 2013), using as cartographic base the orthophotos from PNOA (Spanish National Program for Aerial Orthophoto). (d) The data were processed through the PostgreSQL relational database management system (RDBMS) version 11.3 (PostgreSQL Global Development Group, 2013) together with R version 3.6.0 (R Core Team, 2019) using the package Rpostgres (Wickham et al. 2018) and the spatial extension PostGIS version 2.5.2 (PostGIS Project Steering Committee, 2019), in addition to other packages: DBI (R-SIG-DB, 2018), knitr (Xie, 2019), dplyr (Wickham et al. 2019) and splitstackshape (Mahto, 2019). In this way, we created a validation process in R and SQL code to check specific errors derived from digitalisation and correct them. When it was necessary, the surveys were re-checked and we ran several validation rounds were run. Specific examples are given below: - We checked if all the information was associated: samplings without any observers assigned, groups that did not have observations assigned, etc. - Regarding null values, we checked if all the essential variables were filled out, e.g. males without age variable, groups without size value, etc. - We identified if there was duplicated information. - We revised if there were incongruous data, e.g. the hour when a group was observed had to be between the start and end time of sampling. - We also checked the “control fields” because they were susceptible to contain errors, e.g. the automatic sum of individuals did not match the indicated group size; groups categorised as mixed should be females with kids, etc. (e) The standardisation to Darwin Core was done according to the practices recommended by the TDWG guidelines (https://dwc.tdwg.org/terms/).

Descripción de la metodología paso a paso:

  1. Overall, one sampling has been carried out annually, although in 1995 two samplings were made but none in 1994, 1999, 2005, and 2006. In each sampling, the observers walk the linear transects making notes on the ibex groups sighted and collecting different variables such as: the number of individuals (group size); the contact hour; and perpendicular distance of each group of goats to the transect line. At the individual level, records are made of physical condition, the sex of each ibex, and the age in the case of the males. In addition, the date as well as the starting and ending times of the sampling are also recorded, as well as the identity of the observers. The transects are sampled by two or more observers, on foot or by vehicle, when terrain conditions allow, at a speed of no more than 15 km/h. The sampling time is adapted to the dates when the field work is carried out, recording the official time in the surveys. In summer time, the observers walk the transects mainly at dawn and dusk. In the other seasons, the sampling time is extended throughout the day. The optical material used were binoculars (8 x 35) and telescope (20 x 40). When circumstances prevent a satisfactory sighting (individuals far away or hidden by the surrounding vegetation, temporary brevity of contact, etc.) they are not taken into account. The probability of detecting an individual is related to spatial distribution of the sightings (Buckland et al. 2004) and visibility conditions, habitat coverage, land topography, animal and group size, as well as the density. The method assumes that, if the density is high, many individuals will be sighted up close. If the density is low, few individuals far away will be sighted. The following premises must be assumed: animals on the transect line are always observed; animals must be immobile when they are observed or located on the spot before they move; no animal should be counted twice; distances and sighting angles must be calculated accurately and sightings are independent events. With all these data collected, the parameters that define the population were: density (number of individuals/km²), sex ratio (number of females/number of males), birth rate (number of kids/number of adult females) and age pyramid mainly for males, in which the size of the horns and body morphology make it easier to determine the years of age or age class to which they belong.

Referencias Bibliográficas

  1. Anderson, D. R., Laake, J. L., Crain, B. R. & Burnham, K. P. Guidelines for line transect sampling of biological populations. J. Wildl. Manag. 43, 70–78 (1979).
  2. Buckland, S. T. et al. Advanced distance sampling. Estimating abundance of biological populations. (Oxford University Press, 2004).
  3. Burnham, K. P., Anderson, D. R. & Laake, J. L. Estimation of density from line transect sampling of biological populations. Wildl. Monogr. 72, 202 (1980).
  4. Escós, J. & Alados, C. Estimating mountain ungulate density in Sierras de Cazorla y Segura. Mammalia 52, 425–428 (1988).
  5. ESRI Environmental Systems Research Institute. ArcGIS Desktop: Release 10.2. (2013).
  6. Fandos, P. La cabra montés (Capra pyrenaica) en el Parque Natural de Cazorla, Segura y Las Villas. (Colección Técnica - ICONA, 1991).
  7. Granados, J. E. et al. Plan de gestión de la cabra montés (Capra pyrenaica) en el Espacio Natural Protegido de Sierra Nevada. in III Congreso Forestal Español (2001).
  8. Granados, J. E., Cano-Manuel, F. J. & Fandos, P. Seguimiento de la población de cabra montés. in Observatorio de Cambio Global Sierra Nevada: metodologías de seguimiento (eds. Aspizua, R., Barea-Azcón, J. M., Bonet, F. J., Pérez-Luque, A. J. & Zamora, R. J.) 79 (Consejería de Medio Ambiente, Junta de Andalucía, 2012).
  9. Mahto, A. splitstackshape: Stack and Reshape Datasets After Splitting Concatenated Values. (2019).
  10. Pérez, J. M., Granados, J. E. & Soriguer, R. C. Population dynamic of the Spanish ibex Capra pyrenaica in Sierra Nevada Natural Park (southern Spain). Acta Theriol. (Warsz.) 39, 289–294 (1994).
  11. PostGIS Project Steering Committee. (2019).
  12. PostgreSQL Global Development Group. (2019).
  13. R Core Team. R: A language and environment for statistical computing. (R Foundation for Statistical Computing, 2019).
  14. (R-SIG-DB) R Special Interest Group on Databases, Wickham, H. & Müller, K. DBI: R Database Interface. (2018).
  15. Rivas-Martínez, S. Memoria del mapa de series de vegetación de España 1: 400.000. (ICONA. Ministerio de Agricultura, Pesca y Alimentación, 1987).
  16. Xie, Y. knitr: A General-Purpose Package for Dynamic Report Generation in R. (2019).
  17. Wickham, H., Ooms, J. & Müller, K. RPostgres: ‘Rcpp’ Interface to ‘PostgreSQL’. (2018).
  18. Wickham, H., François, R., Henry, L. & Müller, K. dplyr: A Grammar of Data Manipulation. (2019).

Metadatos Adicionales

Identificadores Alternativos 10.15470/3ucqfm
5fe81b76-6d2f-4f09-a9e3-301e8e1eb918
https://ipt.gbif.es/resource?r=iberianibex