Otoliths Reference Collection. CBMR-AFORO (ICM-CSIC)

Occurrence
Latest version published by Institut de Ciències del Mar (CSIC) on Apr 24, 2023 Institut de Ciències del Mar (CSIC)
Home:
http://aforo.cmima.csic.es
Publication date:
April 24, 2023
License:
CC-BY-NC 4.0

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 9,394 records in English (564 KB) - Update frequency: as needed
Metadata as an EML file download in English (28 KB)
Metadata as an RTF file download in English (11 KB)

Description

This collection is a catalogue of the otolith part of the CBMR (ICM-CSIC) and associated to the data base AFORO. The database is regularly updated and at present (2023) it contains a total of 7905 high resolution images corresponding to 2716 species from 274 families at the CBMR of the Institut de Ciències del Mar (ICM-CSIC) from worldwide, especially in Mediterranean, Canary Islands, Antarctic and Namibian waters. Also, AFORO shows images from diverse atlases of otoliths (Rivaton & Bourret 1999; Leopold, van Damme, Philippart & Winter 2001; Campana 2004; Tuset, Lombarte & Assis 2008; Lin & Chang 201; Sadighzadeh, Tuset, Dadpour, Otero-Ferrer, Lombarte 2012; Volpedo, Thompson & Avigliano 2017). AFORO website (http://aforo.cmima.csic.es/) offers an online open catalogue of otolith images and its associated shape analysis through pattern recognition techniques applying wavelet analysis (WT), elliptic Fourier analysis (EFA) and classical morphometries, including relationship with fish length. The website also includes an Automatic Taxon Identification that allows to search and identify directly using query images of otoliths. The data base also is associated with Fishbase and Osteobase datbases. More information about the catalogue is here: https://scientiamarina.revistas.csic.es/index.php/scientiamarina/article/view/192

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 9,394 records.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Chic Ò, Manjabacas A, Guerrero E, Lombarte A (2023). Otoliths Reference Collection. CBMR-AFORO (ICM-CSIC). Version 1.11. Institut de Ciències del Mar (CSIC). Occurrence dataset. https://ipt.gbif.es/resource?r=aforo&v=1.11

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is Institut de Ciències del Mar (CSIC). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: e95d0010-b3f1-11de-82f8-b8a03c50a862.  Institut de Ciències del Mar (CSIC) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF Spain.

Keywords

Occurrence; otolith; otoliths; sagitta; fish otoliths; otolith shape; otolith database; automatic taxon identification; wavelet; Fourier; curvature space scale; 3D otoliths; marine

Contacts

Òscar Chic
  • Originator
  • Data Science Lab Manager
Institut de Ciències del Mar (ICM-CSIC)
  • Passeig Marítim de la Barceloneta, 37-49
E-08003 Barcelona
Barcelona
ES
  • +34 93 230 95 00
Amalia Manjabacas
  • Metadata Provider ●
  • Originator ●
  • Point Of Contact
  • Technician
Institut de Ciències del Mar (ICM-CSIC)
  • Passeig Marítim de la Barceloneta, 37-49
E-08003 Barcelona
Barcelona
ES
  • +34 93 230 95 00
Elena Guerrero
  • Metadata Provider ●
  • Originator ●
  • Point Of Contact
  • Curator
Institut de Ciències del Mar (ICM-CSIC)
  • Passeig Marítim de la Barceloneta, 37.
E-08003 Barcelona
Barcelona
ES
  • +34 93 230 95 00
Antoni Lombarte
  • Metadata Provider
  • Researcher
Institut de Ciències del Mar (ICM-CSIC)
  • Passeig Marítim de la Barceloneta, 37-49
E-08003 Barcelona
Barcelona
ES
  • +34 93 230 95 00

Geographic Coverage

Species and families from the Mediterranean Sea, Antarctic Ocean (Weddell Sea, Ross Sea, Antarctic Peninsula), Atlantic Ocean (Argentina, Uruguay, South-western Islands, Gulf of Mexico, USA, Canada, Baltic Sea, North Sea, Ireland Sea, Cantabric Sea, Portugal, Madeira, Canary Islands, Morocco, Cabo Verde, Senegal, Gabon, Namibia), Indic Ocean (Madagascar, Tanzania, Red Sea, Iran) and Pacific (Australia, New Zealand, New Caledonia, Muroroa, Peru, Ecuador, Canada, Alaska).

Bounding Coordinates South West [-90, -180], North East [90, 180]

Taxonomic Coverage

No Description available

Kingdom Animalia
Phylum Chordata
Order Acipenseriformes, Albuliformes, Anguilliformes, Argentiniformes, Atheriniformes, Aulopiformes, Batrachoidiformes, Beloniformes, Beryciformes, Characiformes, Clupeiformes, Cypriniformes, Cyprinodontiformes, Elopiformes, Gadiformes, Gasterosteiformes, Gasterostiformes, Gonorynchiformes, Lampridiformes, Lophiiformes, Mugiliformes, Myctophiformes, Ophidiiformes, Osmeriformes, Osteoglossiformes, Perciformes, Pleuronectiformes, Polymixiiformes, Salmoniformes, Scorpaeniformes, Siluriformes, Stephanoberyciformes, Stomiiformes, Tetraodontiformes, Zeiformes

Temporal Coverage

Living Time Period 1975

Project Data

No Description available

Title Project ION tools for the search, management and visualization of heterogenous data over Internet (Ref: MCyT - TIC2000-0376-p4-04)
Funding Ministerio Ciencia y Tecnología (MCyT)
Study Area Description Otolith images and its associated shape analysis through pattern recognition techniques applying Fourier transform (FT), curvature space scale (CSS) and wavelet analysis (WT) are used in identification of stocks, populations and species as part of ecological, trophic , paleontological, archeological and fishery studies. This site also includes an Automatic Taxon Identification such allows to search and identify directly using query images of otholits.

The personnel involved in the project:

Emili García Ladona
  • Principal Investigator

Collection Data

Collection Name CBMR-AFORO
Collection Identifier e95d0010-b3f1-11de-82f8-b8a03c50a862
Parent Collection Identifier Not applicable
Specimen preservation methods No treatment

Additional Metadata

Alternative Identifiers e95d0010-b3f1-11de-82f8-b8a03c50a862
doi:10.15468/wdwxid
https://ipt.gbif.es/resource?r=aforo