PAMP-tracheo: Vascular plants in Pamplona Basin (Navarra, Spain). Undergraduate thesis, D. Vicente
Latest version published by University of Navarra – Department of Environmental Biology on 30 November 2018 University of Navarra – Department of Environmental Biology

This dataset provides information about 2389 preserved specimens from 723 species and subspecies and 80 families of vascular plants. The specimens were collected in the undergraduate thesis project of Vicente (1983), which assessed the vascular plants of Pamplona Basin (Navarra, northern Spain).

GBIF DwC-A EML RTF Versions Rights Cite this
Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 2,389 records.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 2,389 records in Spanish (78 kB) - Update frequency: as needed
Metadata as an EML file download in English (20 kB)
Metadata as an RTF file download in English (17 kB)
Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Ibáñez R, Imas M, Báscones J C, Vicente D (2018): PAMP-tracheo: Vascular plants in Pamplona Basin (Navarra, Spain). Undergraduate thesis, D. Vicente. v2.2. University of Navarra – Department of Environmental Biology. Dataset/Occurrence. https://doi.org/10.15470/tglboy

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is University of Navarra – Department of Environmental Biology. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 1ea32a69-06ec-48d4-9b00-6e954ceb7828.  University of Navarra – Department of Environmental Biology publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF Spain.

Keywords

Occurrence; Specimen; flora; herbarium; Navarra; northern Spain; Pamplona Basin; vascular plants

Contacts

Who created the resource:

Ricardo Ibáñez
Associate Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
María Imas
Technician
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
Juan Carlos Báscones
Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
Doroteo Vicente
Researcher
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600

Who can answer questions about the resource:

Ricardo Ibáñez
Associate Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600

Who filled in the metadata:

Ricardo Ibáñez
Associate Professor
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
María Imas
Technician
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600

Who else was associated with the resource:

Processor
Leticia Romeo Orradre
Technician
University of Navarra
C/ Irunlarrea 1
E-31008 Pamplona
Navarra
ES
+34948425600
Geographic Coverage

Specimens were collected in Pamplona Basin (Navarra, northern Spain). The site studied covers an area of over 587 km2. Country: Spain. Province: Navarra (N Spain). Municipalities: Ansoáin, Aranguren, Barañáin, Belascoáin, Beriáin, Berrioplano, Berriozar, Bidaurreta, Burlada, Ciriza, Cizur, Echarri, Egüés, Etxauri, Galar, Goñi, Huarte, Iza, Juslapeña, Noáin - Valle de Elorz, Ollo, Olza, Orcoyen, Pamplona, Tiebas-Muruarte de Reta, Villava – Atarrabia, Zabalza and Zizur Mayor/Zizur Nagusia.

Bounding Coordinates South West [42.649, -1.895], North East [42.93, -1.585]
Taxonomic Coverage

Out of a total of 2389 specimens, 2363 were identified to species or subspecies level. They belong to 723 species or subspecies and 80 families of vascular plants.

Phylum  Tracheophyta (vascular plants)
Class  Equisetopsida (horsetails),  Liliopsida (monocots),  Magnoliopsida (dicotyledons),  Pinopsida (conifers),  Polypodiopsida (modern ferns)
Temporal Coverage
Start Date / End Date 1980-01-20 / 1983-10-18
Project Data

The vascular flora of Pamplona Basin (northern Spain) was assessed. An inventory was conducted based on fieldwork and taxa were identified.

Title Undergraduate thesis project of D. Vicente: “Flora vascular de la Cuenca de Pamplona”
Funding Digitization and georeferencing of the herbarium specimens have been supported through the project: “Informatización y adecuación a la red GBIF de colecciones de plantas vasculares depositadas en el herbario de la Universidad de Navarra-PAMP. Fase II”. Reference: CGL2011-15056-E. Ministerio de Economía y Competitividad. Gobierno de España. Principal investigator: Ricardo Ibáñez.
Study Area Description The area studied is in the middle of Navarra (northern Spain), and is a rounded valley at 400-450 m.a.s.l. surrounded by a mountain belt with a height of about 1000 m.a.s.l. It is close to the boundary between the Mediterranean and Eurosiberian biogeographical regions. The climate is oceanic with Mediterranean influences of some drier months in summer.

The personnel involved in the project:

Principal Investigator
Doroteo Vicente
Principal Investigator
Juan Carlos Báscones
Curator
María Imas
Processor
Leticia Romeo
Principal Investigator
Ricardo Ibáñez
Sampling Methods

Samples were collected between the years 1980 and 1983, but most of the specimens were collected in the last two years.

Study Extent The specimens were collected in Pamplona Basin (Navarra, northern Spain).

Method step description:

  1. Plant collection. Plant vouchers were selected and collected in the field.
  2. Identification to species or subspecies level. Identification was performed between 1980 and 1983 by D. Vicente and J.C. Báscones using Flora europaea (Tutin et al. 1964-1980).
  3. Plant conservation. Specimens were dried and pressed for conservation using standard protocols. Vouchers were deposited in the herbarium of the University of Navarra.
  4. Numbering and digitization of vouchers. From 2012 to date, each specimen was labelled, with a unique collection number, and digitized, using HERBAR software (v3.7.1 Pando et al. 1994-2010).
  5. Revision of species identification. Original identification of some herbarium specimens was revised. Between September 2013 and January 2018, the identification of 140 specimens was corrected, and was refined in 56, either by providing the specific or the subspecific epithet.
  6. Nomenclature was updated using Flora iberica (Castroviejo 1986-2015).
  7. Names of municipalities, localities and place names were standardized according to Toponimia Oficial de Navarra (http://toponimianavarra.tracasa.es/).
  8. Georeferencing. Localities were georeferenced using geographic or UTM or coordinates. Datum and uncertainty were also assigned.
  9. Internet exportation. Data were exported from the HERBAR database under a Darwin Core format (Wieczorek et al. 2012).
  10. Data checking and validation. Coordinates, characters and format of dates were checked for possible mistakes using Darwin test software (v3.3, Ortega-Maqueda & Pando 2008). This software allowed validating data in the Darwin Core format.
  11. Metadata were documented and the dataset was published in the GBIF data portal using the Integrated Publishing Toolkit (IPT v2.3.5) of GBIF.es (http://ipt.gbif.es/).
Collection Data
Collection Name Herbario PAMP: colección CPAMPLONA_Vicente
Specimen preservation methods Dried and pressed
Curatorial Units Count 2,389 +/- 1 sheets
Bibliographic Citations
  1. Ortega-Maqueda I, Pando F (2008): DARWIN TEST (3.3): Una aplicación para la validación y el chequeo de los datos en formato Darwin Core 1.2, Darwin Core 1.4 o Darwin Core Archive. Unidad de Coordinación de GBIF.ES, CSIC, Ministerio de Economía y Competitividad, España. http://www.gbif.es/Darwin_test/Darwin_test.php
  2. Pando F et al. (1994–2010): HERBAR (3.7): Una aplicación de bases de datos para gestión de herbarios. Unidad de Coordinación de GBIF.ES, CSIC, Ministerio de Ciencia e Innovación, España. http://www.gbif.es/herbar/herbar.php
  3. Tutin TG, Heywood VH, Burges NA, Moore DM,Valentine DH, Walters SM & Webb DA (eds.) (1964-1980): Flora Europaea, Vols. 1-5, Cambridge UniversityPress, Cambridge.
  4. Vicente D (1983): Flora vascular de la Cuenca de Pamplona. Undergraduate thesis. University of Navarra.
  5. Wieczorek J, Bloom D, Guralnick R, Blum S, Döring M, Giovanni R, Robertson T, Vieglais D (2012): Darwin Core: An evolving community-developed biodiversity data standard. PLoS ONE 7(1): e29715. https://doi.org/10.1371/journal.pone.0029715
Additional Metadata

The origin of the PAMP Herbarium dates back to the arrival at the University of Navarra by Professor T.M. Losa España in 1964. One year later M.L. López Fernández began her doctoral thesis, maintaining her contributions to the herbarium uninterruptedly for several decades. Most of the material deposited in the herbarium comes from collections made by researchers from the Department of Environmental Biology (formerly Department of Botany) of the University of Navarra, as a result of theses and dissertations generally carried out in the territory of the Autonomous Community of Navarra (Spain). The herbarium store c. 100 000 sheets with dried specimens. The digitisation of the specimens has been done through the HERBAR v3.7.1 software (Pando et al., 1994-2010) and was supported by the Spanish Government (CGL2007-30978-E, CGL2009-08507-E and CGL2011-15056-E).

Alternative Identifiers doi:10.15470/tglboy
1ea32a69-06ec-48d4-9b00-6e954ceb7828
https://ipt.gbif.es/resource?r=pamp-tracheo-cpamplona_dv